rs29353145 SNP Detail

Summary

• ID
  rs29353145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12746053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAT CACGGACGTA ATGAAGTTTG
  Y
  GTTATGTATG CATTTTTATT ATACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38597888	mCV23882747	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146804302	ENSMUSSNP1371800	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss323253703	CHEV_10_12590107	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29353145					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12746053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1301	CpG island 1301	566 bp distal
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	452 bp distal
Tssr3138	transcription start site region 3138	822 bp upstream
Tssr92368	transcription start site region 92368	1877 bp downstream
Tssr92369	transcription start site region 92369	1328 bp downstream
Tssr96726	transcription start site region 96726	1172 bp upstream
Tssr96727	transcription start site region 96727	1087 bp upstream
Tssr96728	transcription start site region 96728	792 bp upstream
Tssr96729	transcription start site region 96729	668 bp upstream
Utrn	utrophin	944 bp upstream