rs29353598 SNP Detail

Summary

• ID
  rs29353598
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:85893008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCCGAGCT ATCTATCCCT CCAGACCCTC TAAAAAGTGT
  TTTTCGCTGA AATGTTTTAT CACAGCAACA GAAAGGAAAT TAGGGCAGCC AGAAAACTGT
  K
  GTTCTTCAGC TGCATAAATT TGAGTTTGTT TGTTACACAG CGAGTGCTGA CTGATCCAGG
  GATCATGAGG ATGTGCGACC TAATCTGTAC TCTCAAATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38598116	mCV27559964	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	T
ss147216541	ENSMUSSNP3658461	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		T
ss323373264	CHEV_10_85519889	CHEVERUD	SCREENING_POP	f	SNP						G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29353598					SNP	G	G	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:85893008 () rs orientation: forward

Symbol	Name	Function Class
Rr217171	regulatory region 217171	408 bp distal
Rr223758	regulatory region 223758	107 bp proximal
Syn3	synapsin III	within coordinates
Tssr98759	transcription start site region 98759	474 bp downstream
Tssr98760	transcription start site region 98760	491 bp downstream