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rs29354240 SNP Detail
Summary
  • ID
    rs29354240
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr10:127345815 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTGGT TGTCAAGCTC AAAGCCTGGC
    Y
    GTGTGAGGGC CAAGACCTTA GAGGA                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
BTBR T<+> Itpr3/J
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss38597958 mCV22968928 ABI CRAMUS_MOUSE f SNP T T T C
ss61334360 NES16949420 PERLEGEN MM_PANEL2 f SNP T T C T C T C C
ss147732716 ENSMUSSNP4744431 ENSEMBL ENSEMBL_Sanger f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
BTBR T<+> Itpr3/J
DBA/2J
FVB/NJ
KK/HlJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs29354240 SNP T T T T C T C T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61334360 NES16949420 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:127345815 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2359 CpG island 2359 1620 bp distal
Cpgi2360 CpG island 2360 350 bp distal
Cpgi2361 CpG island 2361 1595 bp proximal
Rr402328 regulatory region 402328 1281 bp downstream
Rr402329 regulatory region 402329 615 bp downstream
Rr440928 regulatory region 440928 797 bp distal
Rr440929 regulatory region 440929 185 bp distal
Rr440930 regulatory region 440930 1980 bp proximal
Stac3 SH3 and cysteine rich domain 3 1123 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory