rs29354586 SNP Detail

Summary

• ID
  rs29354586
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3672602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCATA TAATAAATGC
  AGAAATGGCT CTGCCTTTTG CTGGACAGAC AAGGGATAGA CAATAAGCCC CTGAAAGGCT
  ACCGACACCT TCAGCAGGAG GCAACCCTGT CTGTAATGCC GGTGTACAGG CCTCTGCTGA
  CACCCCACCC CCACCCCCTC CTGTACAGCC TTTGAAGAGT TGCACAGAGC TGTGGTTCTG
  R
  CTTCAGAGGG AATCAAACTG ATTTAGGGGA GAATGATCAT TTGGGGGAAG CAGTGCTTGG
  CCCCCCTGGC TGAAAGCACA GTGTCCCATT CACTGAGCTG ATCCTAAAAG GACTCAAAAA
  GCAGCTACTG CAATTTAGGG CCAGTTGATG GATTTAAGGG CTGCTGGCTC TTTGTTGAAA
  TGCATATTAA TAAAGAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38596963	mCV25387176	ABI	CRAMUS_MOUSE	f	SNP	G	G		A	A
ss52125803	NES15247328	PERLEGEN	MM_PANEL2	r	SNP			T		T	T		T	T	T	T		C
ss146748587	ENSMUSSNP5410839	ENSEMBL	ENSEMBL_Sanger	r	SNP		C			T
ss323242461	CHEV_10_6623939	CHEVERUD	SCREENING_POP	r	SNP							C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29354586					SNP	G	G	A	A	A	A	G	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52125803	NES15247328	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3672602 () rs orientation: forward

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	within coordinates
Gm56946	predicted gene, 56946	within coordinates
Rr219187	regulatory region 219187	1002 bp distal
Rr227319	regulatory region 227319	within coordinates