rs29354658 SNP Detail

Summary

• ID
  rs29354658
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5205873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGAG TGTGTGTATG
  TGTCTGTGTG TGTGTATGTG TGTGTGTGTG TATGTGTCTG TGTGTGTGTC TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTAGCCAGA GGACAATTTT
  TTCAGTCTGT TCTCTCCTTC CAACTTTGGG GTCTGGATCA AATTCAAATT GTCAGGTTCA
  S
  TGATAAGAAC TTTTGCTTGC TGAAACATCT TGCGAGCTGC ACTTTTGAAG TTTTAGAAAG
  GCATAATTAT TAAATCATCA GACCATGAGT CATCACCTTT TGAAAAGAAC CTTTAAGTTT
  CCTATTCAAA AAGAGAACGC AAGTGGGGGC TAATAGGGAG GATGCGGATG TGGCAAATAC
  ATTCAAAATG TACTATACAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38594797	mCV23713770	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G
ss146738477	ENSMUSSNP775691	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G		C
ss323239420	CHEV_10_5090668	CHEVERUD	SCREENING_POP	r	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29354658					SNP	C	C	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5205873 () rs orientation: forward

Symbol	Name	Function Class
Rr227855	regulatory region 227855	1874 bp distal
Rr230259	regulatory region 230259	883 bp proximal
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates