rs29355211 SNP Detail

Summary

• ID
  rs29355211
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8819160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTGCTCT GAATTCCAAG
  TGTGGCTTTC AGAACTTCCA AGGAGCAAGG GCCTGTGAGC CTGCATGGCG GCAGGGCTGG
  TTGGTGCCCT AATTGTAGAT CATTTTCTGT GTAGCACTGT GGAAGCCTCT GGCATATCGC
  CTTAGTGTTA TTCCCATGCC TCTACAGCTG CGGGACTTAA CAAGAGGATT AACTAGGTTA
  K
  TTAGATCAAG ACACGGGACT GGGATTGTGG TTTAGTTGGT ACAGTGTGTG TGCCTCATAC
  ACAGATCCCT AGATGCATCC TCCAGCACTG CATAGTCTGA CTGGGGGGTG ACAGAACACG
  CCTATAACCC CAACACTCCG GAGTATTGGG AGTATCAGAA GTTCAAGCTC ATCCACAAGC
  ACATAGCCAA CTGGAGGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38601862	mCV23685956	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss146768432	ENSMUSSNP3414831	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		T		G
ss323245910	CHEV_10_8663214	CHEVERUD	SCREENING_POP	f	SNP				G		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29355211					SNP	G	T	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8819160 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	1131 bp downstream
Rr427431	regulatory region 427431	1556 bp proximal
Tssr96665	transcription start site region 96665	1819 bp downstream
Tssr96666	transcription start site region 96666	1865 bp downstream