rs29355256 SNP Detail

Summary

• ID
  rs29355256
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8761820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCGTCCG GGTCCCCGCG
  CTGCCCACCG CTCGCAGCAG CGCGTCGGCC GACGGGGCGC AAGTTCCCCG CCCGCGGCGT
  CACCGGGCCG CGCCCCCGCG TCGCATGCCC CAGGCTCCGC TGGGTACGAG CACCACTGCC
  AGGACTGGCA CCTCGATCCC GGGCGACCGC GATTGACAAC TCCAGAAACT TTTCCTAGCC
  S
  GGCCCCGCGC AGCAACAGGG TAGCTGGAGC AGAGTCCACA ACACTGGCTG CGGCGGGGAG
  TTCACGGGAC CAGGGAGACA AGAGCCACAC CGCACGGGTG CTGCGTCCTG CTTCGGGGAC
  CGGCTCCGGG TGGCACACCA CTCGCCTCTA CTGGAGAGTT TGTGCAGGGC TGGGCAGGGG
  ACAGTGACGC CTGTGGACCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38599235	mCV23688392	ABI	CRAMUS_MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29355256					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8761820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	within coordinates
Gm26674	predicted gene, 26674	within coordinates
Rr427411	regulatory region 427411	1880 bp distal
Rr427412	regulatory region 427412	within coordinates
Sash1	SAM and SH3 domain containing 1	6 bp upstream
Tssr92336	transcription start site region 92336	1978 bp downstream
Tssr96654	transcription start site region 96654	378 bp upstream
Tssr96655	transcription start site region 96655	191 bp upstream
Tssr96656	transcription start site region 96656	129 bp upstream
Tssr96657	transcription start site region 96657	46 bp upstream
Tssr96658	transcription start site region 96658	within coordinates
Tssr96659	transcription start site region 96659	16 bp downstream
Tssr96660	transcription start site region 96660	40 bp downstream
Tssr96661	transcription start site region 96661	125 bp downstream
Tssr96662	transcription start site region 96662	155 bp downstream
Tssr96663	transcription start site region 96663	449 bp downstream
Tssr96664	transcription start site region 96664	513 bp downstream