rs29355631 SNP Detail

Summary

• ID
  rs29355631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93872091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGC GGGGACTTTT GTCTTCTGCT
  Y
  AAACTCTGGG GAGTGTGGAC TGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38602910	mCV23119823	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29355631					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93872091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2121	CpG island 2121	within coordinates
Fgd6	FYVE, RhoGEF and PH domain containing 6	within coordinates
Gm49628	predicted gene, 49628	428 bp upstream
Rr402165	regulatory region 402165	213 bp downstream
Rr437370	regulatory region 437370	535 bp distal
Rr437371	regulatory region 437371	218 bp distal
Rr437372	regulatory region 437372	247 bp distal
Rr437373	regulatory region 437373	within coordinates
Tssr3327	transcription start site region 3327	135 bp upstream
Tssr95293	transcription start site region 95293	758 bp downstream
Tssr95294	transcription start site region 95294	174 bp downstream
Tssr95295	transcription start site region 95295	108 bp downstream
Tssr95296	transcription start site region 95296	717 bp upstream
Tssr98985	transcription start site region 98985	460 bp upstream
Tssr98986	transcription start site region 98986	442 bp upstream
Tssr98987	transcription start site region 98987	413 bp upstream
Tssr98988	transcription start site region 98988	494 bp downstream
Vezt	vezatin, adherens junctions transmembrane protein	430 bp upstream