rs29356482 SNP Detail

Summary

• ID
  rs29356482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42152128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGCCTC CCGCGGAGGC
  GCAGGGCAAG TCAGCAGAGT CCTGGGCTCT TCTCCCGCTC CCCAGCCCTG CGATCCCCCC
  CACCCCTCCC AGGCGAGAGG CCCCCTAGGG CTGGCGCGGG CAACTCCCGT CTTTTCCTCT
  CCGCCCGCGG ACCAGCAGGG AGAGCGTGGG GGTCTGGGTG CAGACCTGCC AAGATCACTT
  Y
  CAACAAGAGA GAGAGAGAGA GAGGGCCGAC CCCGCAGGAC TAAGAAGATC TGAGATGTAT
  TTTCTTGGGG ACGTGGGGCC CTCCGCCCCC TTCCAGGTCA GAAACGGGAA GGAGGAAGCA
  AGTGGGAACA TAAATCTTCC AACAGGTCGG GAAGCGCCAA ATCTCTCGGA CTGCATGAAA
  ACCCGGACCA GCACCGTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38600822	mCV23543102	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147078832	ENSMUSSNP1645007	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29356482					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42152128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	within coordinates
Foxo3	forkhead box O3	within coordinates
Gm38485	predicted gene, 38485	1930 bp upstream
Gm56983	predicted gene, 56983	753 bp downstream
Gm66047	predicted gene, 66047	736 bp upstream
Rr401852	regulatory region 401852	1428 bp upstream
Rr430523	regulatory region 430523	1981 bp distal
Rr430524	regulatory region 430524	554 bp proximal
Rr430525	regulatory region 430525	747 bp proximal
Rr430526	regulatory region 430526	1581 bp proximal
Tssr93079	transcription start site region 93079	760 bp upstream
Tssr97433	transcription start site region 97433	480 bp upstream
Tssr97434	transcription start site region 97434	513 bp downstream
Tssr97435	transcription start site region 97435	533 bp downstream
Tssr97436	transcription start site region 97436	556 bp downstream
Tssr97437	transcription start site region 97437	612 bp downstream
Tssr97438	transcription start site region 97438	1468 bp downstream
Tssr97439	transcription start site region 97439	1503 bp downstream