rs29356534 SNP Detail

Summary

• ID
  rs29356534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40759625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGAGGG GGCCTGCCTT
  CGACCCCGCC CCCAAGAGGA TGCTTCATTC AATTGGATGT CATCTTCCCT CATTCCCGAG
  CCCAGCACCG TTCTCTCCGG CCCCCTCCCC CAAAGTGCGG ATCGGGCAAT ACCACAGAGC
  CTCAGGACAG GGGGAAGCGC CGTCCTCTTG CCCACGGACG GGTAAGTGGG TGGATGCTCA
  Y
  TCTCCCACCA TGCCGCCGTA CGCCCTGCAG GGTTCGAGGG GAGAGTGCGA ATCCTAAGTT
  CAGAGACCTG GGACCCGTCC GGTGCAGCTC CGGGGAAAGG TCGTGAGGCC AGGCGGAGAG
  CGCCCCGCGG CTCCCCCTGC TGCAGGCGCG GGTCCCCGCG CCCGGTTGTG GAGCGTCGCG
  CGGGGAGGGG GCGGCGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38599822	mCV23337230	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss147070988	ENSMUSSNP5681202	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29356534					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40759625 () rs orientation: forward

Symbol	Name	Function Class
Cdc40	cell division cycle 40	486 bp upstream
Cpgi1464	CpG island 1464	within coordinates
Rr401845	regulatory region 401845	90 bp downstream
Rr430264	regulatory region 430264	within coordinates
Rr430265	regulatory region 430265	127 bp proximal
Rr430266	regulatory region 430266	209 bp proximal
Rr430267	regulatory region 430267	1107 bp proximal
Tssr93031	transcription start site region 93031	146 bp downstream
Tssr93032	transcription start site region 93032	121 bp downstream
Tssr93033	transcription start site region 93033	31 bp downstream
Tssr93034	transcription start site region 93034	within coordinates
Tssr93035	transcription start site region 93035	190 bp upstream
Tssr97391	transcription start site region 97391	499 bp upstream
Wasf1	WASP family, member 1	within coordinates