rs29356696 SNP Detail

Summary

• ID
  rs29356696
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4215195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAAAGTCT GTTTCTAAAT
  GAATGAACCC CAAAGAAACT GGCCTTCCGA AATAAGTGGA GAAACCAAAT TTTATCCTGA
  AAAACCGAGT TGTTCCCAAT AAACACTTAA ATGACCATGA ATAAGGACCA AGTGTTATTA
  GCTAAATTAA TGTTTTCATT GATACTCAAG TAACCTGTAT CAAATCTAGG GACAAGATAT
  W
  TATCTGGCAT CTAGATTCAA TGCTCTTACT GATTTTAAAT CACTAATTCC TTCACTCATC
  CACAGAGCCT CGCTTTGTGG CTCTCAGACT TGGCTGAAAC TCACTCACTA CCTACCCCAT
  GCAGGCCTCA GGCTCAAGCT AACCCTCCAA CTTCAGCCAC TGAAGCATCA GGATTTCAGA
  CACGAATCAT GGCACCGGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38601818	mCV25201832	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	T
ss146743552	ENSMUSSNP6137709	ENSEMBL	ENSEMBL_Sanger	r	SNP			T		A
ss323240837	CHEV_10_6081346	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29356696					SNP	A	A	A	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4215195 () rs orientation: forward

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	1185 bp upstream
Cpgi1267	CpG island 1267	1107 bp proximal
Cpgi1268	CpG island 1268	382 bp proximal
Gm67397	predicted gene, 67397	285 bp downstream
Gm67407	predicted gene, 67407	107 bp upstream
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	695 bp proximal
Rr426945	regulatory region 426945	1601 bp proximal
Tssr3113	transcription start site region 3113	922 bp upstream
Tssr3114	transcription start site region 3114	1335 bp upstream
Tssr92240	transcription start site region 92240	1128 bp upstream
Tssr92241	transcription start site region 92241	1158 bp upstream