rs29356879 SNP Detail

Summary

• ID
  rs29356879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43873307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT CCATGTGGCT GGAACCCAGA
  Y
  GAGATGTATT TGATGAATTG AAATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38605436	mCV25442727	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C	T
ss147089775	ENSMUSSNP5893927	ENSEMBL	ENSEMBL_Sanger	f	SNP					T
ss323284082	CHEV_10_43717117	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29356879					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43873307 () rs orientation: forward

Symbol	Name	Function Class
Crybg1	crystallin beta-gamma domain containing 1	within coordinates
Rr384605	regulatory region 384605	332 bp downstream
Rr430903	regulatory region 430903	535 bp distal
Tssr97483	transcription start site region 97483	949 bp upstream
Tssr97484	transcription start site region 97484	4 bp downstream
Tssr97485	transcription start site region 97485	32 bp downstream
Tssr97486	transcription start site region 97486	53 bp downstream
Tssr97487	transcription start site region 97487	68 bp downstream
Tssr97488	transcription start site region 97488	116 bp downstream