rs29357812 SNP Detail

Summary

• ID
  rs29357812
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:44234383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTCTCA GGAAGCAGGC
  TGAAGAGAAC AGTCTTTATA GAGCAACGTT GTTTCTGTTT AAGTGGGGTT TGTTGTTTGG
  ATTGAATAAA GATTTGTTTT GTTTTGTTTA TTGTTTGTTT GTCTGTTTTT GTTTGGTTTG
  GGTTTCTTGC TGGGGGGGTG GTTGGGGTTT TTTTTGTTTG TTTGTTTGTT TTTGTTTTTT
  K
  TTTTTTTGAG ACAGGCTTTC TCTGTGTAGC ACTGTAGATC AAGCTGGCCT TGAACTCATC
  CTTCTGACTA CTGGGTTTAA AGGGTACCAC CACTTCCCTG GTGTTGGTTT GCTTTTGTTG
  TTGTTGTTGT TGTTTTTTAA TCTTCTTAAA ATGAATCTTA AAGTCTTTTA AACAATATTA
  TCATAATATG TCAGGGCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38603575	mCV23013875	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss147093275	ENSMUSSNP6825577	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29357812					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:44234383 () rs orientation: forward

Symbol	Name	Function Class
Atg5	autophagy related 5	within coordinates
Mir1929	microRNA 1929	1289 bp upstream
Rr227725	regulatory region 227725	184 bp distal
Tssr93169	transcription start site region 93169	5 bp upstream