rs29357934 SNP Detail

Summary

• ID
  rs29357934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40759391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCGAAA AAAACTTTAT
  TATTGAGATA ACTGTATCAA AACTTGAGAT TCACAAACAT TTATCTAAAG AAGCACAAGG
  GATTACAACT ATTTGTAACT TTCAGGACCT CGTTGATTAA AGACCCAGTC CTGAGATGTG
  TTTGAAGCCT CGAGGACCTT CACTCCCGGC GTACAGTGCG GCGAGGAGCT CGCGGCACCA
  Y
  GGGAAATGTA GTTTGGAGCG AGGAGGTGGA GCCCGGCAGA GGGGGCCTGC CTTCGACCCC
  GCCCCCAAGA GGATGCTTCA TTCAATTGGA TGTCATCTTC CCTCATTCCC GAGCCCAGCA
  CCGTTCTCTC CGGCCCCCTC CCCCAAAGTG CGGATCGGGC AATACCACAG AGCCTCAGGA
  CAGGGGGAAG CGCCGTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38611442	mCV23337241	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147070974	ENSMUSSNP5041798	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29357934					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40759391 () rs orientation: forward

Symbol	Name	Function Class
Cdc40	cell division cycle 40	252 bp upstream
Cpgi1464	CpG island 1464	within coordinates
Rr401845	regulatory region 401845	within coordinates
Rr430263	regulatory region 430263	1842 bp distal
Rr430264	regulatory region 430264	within coordinates
Rr430265	regulatory region 430265	361 bp proximal
Rr430266	regulatory region 430266	443 bp proximal
Rr430267	regulatory region 430267	1341 bp proximal
Tssr93031	transcription start site region 93031	74 bp upstream
Tssr93032	transcription start site region 93032	98 bp upstream
Tssr93033	transcription start site region 93033	125 bp upstream
Tssr93034	transcription start site region 93034	225 bp upstream
Tssr93035	transcription start site region 93035	424 bp upstream
Tssr97391	transcription start site region 97391	265 bp upstream
Wasf1	WASP family, member 1	85 bp upstream