rs29357972 SNP Detail

Summary

• ID
  rs29357972
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12746762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC ATCCAGAAGG AGGTCCAGAA
  M
  AAGACCTGCC CTCCAAAGAG ATGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38609255	mCV23882726	ABI	CRAMUS_MOUSE	f	SNP	A		A	C
ss146804326	ENSMUSSNP3849552	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
ss323253706	CHEV_10_12590816	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29357972					SNP	A	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12746762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1301	CpG island 1301	1275 bp distal
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	1161 bp distal
Tssr3138	transcription start site region 3138	1531 bp upstream
Tssr96726	transcription start site region 96726	1881 bp upstream
Tssr96727	transcription start site region 96727	1796 bp upstream
Tssr96728	transcription start site region 96728	1501 bp upstream
Tssr96729	transcription start site region 96729	1377 bp upstream
Utrn	utrophin	1653 bp upstream