rs29358057 SNP Detail

Summary

• ID
  rs29358057
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:3671251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCGACCTA CATGAACTGG
  GTACTCTTGG AAGGCAGGCT GGGGCTGAAA GAGACTAGAC CTCGAGAGAA AATAATGAGG
  CCAAGACAAG TTTTCTCTGA TCAAGGCCTG TGAGTTTACT AAGAGACTGC TTATAAAGGG
  GGAAGGCCCA CCCTCTCCCT CCCCACCCCC CACACCCCCA GTCCATCCTT GGTGCTTTGT
  Y
  ACCATGCTGT CAGGACTTGG TCGCCAGGCT GTTGCTTATT CAGGAAGACA GGTTCAGCCT
  CTCAGCAGGT AGCAGCATCT CAGAGAAGAG CAGGGCAGTT GTCACTTCAA AAGGAAGCCA
  GCCAAGTAGG AAAGCTGCAC GGCAGGTGGC CCCACCTCAG TGGCGACAAG GTCTGCACCA
  GCCTGCTTCA GGCTGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38610231	mCV25387210	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss146748633	ENSMUSSNP3902969	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A
ss323242477	CHEV_10_6625290	CHEVERUD	SCREENING_POP	r	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29358057					SNP	T	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:3671251 () rs orientation: forward

Symbol	Name	Function Class
A330032P22Rik	RIKEN cDNA A330032P22 gene	within coordinates
Gm30164	predicted gene, 30164	within coordinates
Gm56946	predicted gene, 56946	within coordinates
Rr219187	regulatory region 219187	within coordinates
Rr227319	regulatory region 227319	951 bp proximal