rs29358172 SNP Detail

Summary

• ID
  rs29358172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67973972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC ACGGTGGAGT AGTCTGGGTA
  R
  AGCAGGACTT TGAAGCTCAT TCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38606170	mCV24239184	ABI	CRAMUS_MOUSE	f	SNP		G	G			A		G
ss47873585	NES11931379	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G		G	G	G	G		A	A	A		G
ss147146190	ENSMUSSNP6417355	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss323351606	CHEV_10_67600890	CHEVERUD	SCREENING_POP	f	SNP											G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29358172					SNP	G	G	G	G	G	A	G	G	G	G	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873585	NES11931379	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67973972 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	1449 bp distal
Rr384864	regulatory region 384864	within coordinates
Rr433197	regulatory region 433197	1527 bp distal
Rr433198	regulatory region 433198	1587 bp distal
Rr433199	regulatory region 433199	1026 bp distal
Rr433200	regulatory region 433200	37 bp proximal
Rr433201	regulatory region 433201	1118 bp proximal
Tssr3230	transcription start site region 3230	1406 bp upstream
Tssr3231	transcription start site region 3231	1385 bp upstream
Tssr3232	transcription start site region 3232	1308 bp upstream
Tssr93877	transcription start site region 93877	1115 bp downstream
Tssr93878	transcription start site region 93878	346 bp downstream
Tssr97991	transcription start site region 97991	1530 bp upstream
Tssr97992	transcription start site region 97992	1518 bp upstream
Tssr97993	transcription start site region 97993	1504 bp upstream
Tssr97994	transcription start site region 97994	1465 bp upstream
Tssr97995	transcription start site region 97995	1446 bp upstream
Tssr97996	transcription start site region 97996	1434 bp upstream
Tssr97997	transcription start site region 97997	1420 bp upstream
Tssr97998	transcription start site region 97998	1360 bp upstream
Tssr97999	transcription start site region 97999	934 bp upstream
Tssr98000	transcription start site region 98000	768 bp upstream