rs29358490 SNP Detail

Summary

• ID
  rs29358490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103204922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCTCGGTG AGATAGCGCA GAAATAGAAT ATAGCACACT
  GAAACGAAAG CGCTGCACTT TTAACTTCCA GCCGAGGAAA GAATCAGAAT CTTAGAGGTG
  Y
  ACTTGCCGGT GCAAAGGGAG ACCCACCCGC TTTTAAAGTC TCCAAGGGTG GGCGTTCTTT
  TCCCTTCGGC CAAGAAATGT CACTGAATGT GCTCATTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38609080	mCV24987593	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss52209746	NES15330459	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		T	T	C	T		T	C	C	T		T
ss147416497	ENSMUSSNP5272788	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss323430995	CHEV_10_102831695	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29358490					SNP	T	T	T	C	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209746	NES15330459	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103204922 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	within coordinates
Cpgi2165	CpG island 2165	96 bp distal
Gm66970	predicted gene, 66970	395 bp upstream
Rr385217	regulatory region 385217	within coordinates
Rr438423	regulatory region 438423	1208 bp distal
Rr438424	regulatory region 438424	598 bp distal
Rr438425	regulatory region 438425	97 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95604	transcription start site region 95604	1392 bp downstream
Tssr95605	transcription start site region 95605	1314 bp downstream
Tssr95606	transcription start site region 95606	1225 bp downstream
Tssr95607	transcription start site region 95607	266 bp upstream
Tssr95608	transcription start site region 95608	315 bp upstream
Tssr99159	transcription start site region 99159	1 bp downstream