rs29358887 SNP Detail

Summary

• ID
  rs29358887
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126601130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGG AGAAACAGAC TAAAAAAGCC
  K
  TGCATGGGAC AGTTTGATAT TATCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss38606698	mCV23467055	ABI	CRAMUS_MOUSE	f	SNP		T	G				G		G
ss50944179	NES14266449	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T		T	G	T	G		T	G
ss147724998	ENSMUSSNP2923243	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						G
ss323527915	CHEV_10_126202317	CHEVERUD	SCREENING_POP	f	SNP												G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29358887					SNP	T	T	G	T	G	T	G	T	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944179	NES14266449	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126601130 () rs orientation: forward

Symbol	Name	Function Class
Rr213450	regulatory region 213450	130 bp distal
Rr221937	regulatory region 221937	231 bp distal
Rr226427	regulatory region 226427	1330 bp distal
Rr385452	regulatory region 385452	within coordinates