rs29359917 SNP Detail

Summary

• ID
  rs29359917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40246701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTACTGGC CTCTTTTTTT
  CTTTTAGGAT TAGAAAATGT GTGCAGGCTG GACGGTGGTG GCACACTCCT TTAATCTCAG
  CACTCTGAAG GCAGAGGCAG GCAGATTGCT GAGTTCGAGG CCAGCTTGGT CTACAAGTGA
  GTTCCAGGAC AGCTAGGGAT ATACAAAGAA ACCCTGTCTC GAAAACAAAG AAAAAAATGT
  K
  TGTAGTATAA TTAAATGTCA GTAGGTTTAA GAGTCAAAAT CATAAAACTT TAGGGATTTT
  ATAATATTGT GTTGTACACG TCACTAATTT TTTTTTTTTT TTTTTTTAAA TAAGGTTTCA
  CTATATCTCT CTGTGGTCTG GAACTCACCT TTTAGACCAG ACTGGTTTCC AGCTTACAGC
  ATTGCTTGTC TCCTTCTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38611177	mCV25187122	ABI	CRAMUS_MOUSE	f	SNP		G	T				T		T
ss52244085	NES15264558	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	T		G	T	T	G	G	T	G	G
ss147065258	ENSMUSSNP162958	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29359917					SNP	G	G	T	T	G	T	T	G	T	T	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52244085	NES15264558	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40246701 () rs orientation: forward

Symbol	Name	Function Class
Cdk19	cyclin dependent kinase 19	within coordinates
Rr214650	regulatory region 214650	1301 bp distal
Rr214651	regulatory region 214651	101 bp distal
Rr219330	regulatory region 219330	1701 bp distal
Rr222642	regulatory region 222642	830 bp distal
Rr384549	regulatory region 384549	557 bp upstream