rs29360013 SNP Detail

Summary

• ID
  rs29360013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4560974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC ATTCTTACTT CCACAGAAGC
  R
  TTCTTTCTCA GATTTATAGA ATAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss38607815	mCV23288083	ABI	CRAMUS_MOUSE	f	SNP	G	G		A		A
ss52131366	NES15248655	PERLEGEN	MM_PANEL2	r	SNP		C	T		C	T	T		C	T
ss146740611	ENSMUSSNP5303624	ENSEMBL	ENSEMBL_Sanger	r	SNP	C	C				T
ss323239730	CHEV_10_5735567	CHEVERUD	SCREENING_POP	r	SNP								C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29360013					SNP	G	G	A	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52131366	NES15248655	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4560974 () rs orientation: forward

Symbol	Name	Function Class
Esr1	estrogen receptor 1 (alpha)	1015 bp upstream
Rr368918	regulatory region 368918	1396 bp upstream
Rr426997	regulatory region 426997	525 bp proximal
Rr426998	regulatory region 426998	1058 bp proximal
Tssr92263	transcription start site region 92263	646 bp upstream
Tssr92264	transcription start site region 92264	839 bp upstream
Tssr92265	transcription start site region 92265	864 bp upstream
Tssr92266	transcription start site region 92266	896 bp upstream
Tssr92267	transcription start site region 92267	971 bp upstream
Tssr92268	transcription start site region 92268	997 bp upstream
Tssr92269	transcription start site region 92269	1077 bp upstream