rs29361394 SNP Detail

Summary

• ID
  rs29361394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103201647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGAGTATAC TCGTATACTT AAAATAAATA AATGATTCTT
  AAAAACAAAA CAAAACAAAC AAAAAACTTT TCCCTTTCCT CTTATTAAAG GAATCTGTAA
  R
  TTAACTAAAA TCTTACAAAA TGTTTCAAAG CATGTGCTGA GGACAGATCT TCAGAAGACA
  GAAGATTTAA ATTTAATTTT TAACTAGCTA TGTAACGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38612295	mCV24987569	ABI	CRAMUS_MOUSE	f	SNP		G	G					A	G
ss52209791	NES15330515	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	G		G	A	G		G	A	A		G
ss147416472	ENSMUSSNP5030990	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss323430990	CHEV_10_102828420	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29361394					SNP	A	G	G	A	G	G	G	A	G	A	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209791	NES15330515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103201647 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	1403 bp downstream
Cpgi2165	CpG island 2165	1662 bp proximal
Gm66970	predicted gene, 66970	712 bp downstream
Rr438423	regulatory region 438423	1532 bp proximal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	1997 bp upstream
Tssr95604	transcription start site region 95604	1866 bp upstream
Tssr95605	transcription start site region 95605	1906 bp upstream
Tssr95606	transcription start site region 95606	1962 bp upstream