rs29361727 SNP Detail

Summary

• ID
  rs29361727
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103206112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTATGGTTAT AGCCATACAC TTACCCAGTA TTAGCACGTG
  CATGTTAAAA AAATGTTTCT CTGTCTCCAA AAAAAAAATA TAAATAGGAG CTACATTGAT
  K
  CTTCTCAATT TATAACACTG GAGTTATTAT GAAGCCAGTT TAAAAACATC ATTTCCTTAG
  GGTAGCAAAG CTGAAAGAGA CTTCAGTGGT TATAAAAAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38611936	mCV24987802	ABI	CRAMUS_MOUSE	f	SNP	T	G					T
ss52209731	NES15330469	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	T	T		G	G	T	T		T	T	T	G		G
ss147416527	ENSMUSSNP4450420	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323431000	CHEV_10_102832885	CHEVERUD	SCREENING_POP	f	SNP												G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29361727					SNP	T	G	T	G	T	T	T	G	G	T	T	G	T	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209731	NES15330469	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103206112 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	982 bp upstream
Cpgi2165	CpG island 2165	1286 bp distal
Gm66970	predicted gene, 66970	1585 bp upstream
Rr385217	regulatory region 385217	302 bp downstream
Rr438424	regulatory region 438424	1788 bp distal
Rr438425	regulatory region 438425	1287 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95607	transcription start site region 95607	905 bp downstream
Tssr95608	transcription start site region 95608	870 bp downstream
Tssr99159	transcription start site region 99159	1182 bp upstream