rs29363439 SNP Detail

Summary

• ID
  rs29363439
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACATTTG CATGTATTTG CCCTGGGAAG CAGTTCTTCT
  CAATCAACCC CCATAGACTG CTTTCCTAGA GCTTCACTTT CTCTCAATGG CCGTTGCATC
  K
  GCTCAGCCAC TCACCAGCAT CCTGGCCTAC AAGCTGTGCC TTAGCAATTA TGTTGTATGT
  CTCTTTAAGG TAGCCCTATC ATTTCTAGTG AGATAAATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38615259	mCV23067254	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss146822751	ENSMUSSNP5638056	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29363439					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430411 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	1182 bp distal
Pex3	peroxisomal biogenesis factor 3	1525 bp upstream
Rr368928	regulatory region 368928	1356 bp downstream
Rr427802	regulatory region 427802	1840 bp distal
Rr427803	regulatory region 427803	1763 bp distal
Rr427804	regulatory region 427804	1558 bp distal
Rr427805	regulatory region 427805	1035 bp distal
Rr427806	regulatory region 427806	51 bp distal
Tssr92399	transcription start site region 92399	1428 bp downstream
Tssr92400	transcription start site region 92400	1409 bp downstream
Tssr96771	transcription start site region 96771	1797 bp upstream
Tssr96772	transcription start site region 96772	1606 bp upstream
Tssr96773	transcription start site region 96773	1582 bp upstream
Tssr96774	transcription start site region 96774	1541 bp upstream
Tssr96775	transcription start site region 96775	1514 bp upstream
Tssr96776	transcription start site region 96776	1501 bp upstream