rs29363738 SNP Detail

Summary

• ID
  rs29363738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12746544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTC AGGTGAGATA AGACATGTAA
  R
  CAAAAACATT GGAGATTCCT GCTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38623050	mCV23882738	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss146804314	ENSMUSSNP4231641	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss323253704	CHEV_10_12590598	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29363738					SNP	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12746544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1301	CpG island 1301	1057 bp distal
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	943 bp distal
Tssr3138	transcription start site region 3138	1313 bp upstream
Tssr92369	transcription start site region 92369	1819 bp downstream
Tssr96726	transcription start site region 96726	1663 bp upstream
Tssr96727	transcription start site region 96727	1578 bp upstream
Tssr96728	transcription start site region 96728	1283 bp upstream
Tssr96729	transcription start site region 96729	1159 bp upstream
Utrn	utrophin	1435 bp upstream