rs29364709 SNP Detail

Summary

• ID
  rs29364709
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8819622 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCATCTCT GTACAGCGAG
  CTGATCCGCA TTCACTGTGC CTCTAGATCT TAAAGCACCT TCGCCAGTGG CCTTAGGTAG
  GTCAGGGATG GTTGTTCCAG GCCTGATAGC CTTCCTTTCA GTCCGCATTG AGCAATCCAT
  CTTTTGCACC CTCCAGTACA AACCCCAATG TGTTTGCTTC CTTCTCTAAA ATAAAGCCTC
  K
  GTCTCTGGGG CATTAAGAGG GCACAGTCCC ATGACACAGA TTCCAGTCAA ATTCTGGCAT
  TCAAATAAAC CTTCCCTTTT TCAAGAGCCA AGGCAACCAG TCGAGAGCAA GCAGTCTTTG
  GGCACTGAGA TGAGAACGCT ACCTGCCAAC TGGGTTGCTC TGGCCTATTG TTTTTGAGAC
  CAGGGAAACA TAAGGAATAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38617752	mCV23685946	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G	G
ss146768438	ENSMUSSNP6948579	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		G		T
ss323245911	CHEV_10_8663676	CHEVERUD	SCREENING_POP	f	SNP						T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29364709					SNP	G	T	T	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8819622 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	669 bp downstream
Rr427431	regulatory region 427431	1094 bp proximal
Rr427432	regulatory region 427432	1977 bp proximal
Tssr96665	transcription start site region 96665	1357 bp downstream
Tssr96666	transcription start site region 96666	1403 bp downstream