rs29365023 SNP Detail

Summary

• ID
  rs29365023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8762953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAAGAGA TGACAGTGCC
  TATCCTATTT GATTTTGTGG CTGCTCACTT TGTGAAACTA AAGAAACCCA CGGAATCTGC
  CCCTTATTAA GGAGGTGGAG TGGAGAGGGG ATGAAGTGAG GGTCCCCCGG ATAGAACAAT
  TACTTCTGAA GTGTCTTCAT CTCTTTCTCA GCTTTCATAC ATTGAGAACA GCAGTCTAAG
  Y
  AATGGGTGAA TAGCTCTCAC CCACAATGTC AAAACGTAAA AAGAAGTAAA ACCCTAGCAT
  AGCAGTATGG GCCTATAAGG CTGGGAAGTA GAGACATCGG GATTTTCGTG GCTTTAGTGG
  CTGCCATTCC AGACAGCTGG TAAGCTCCAG GTTCATGGAG AGATTGATCA TGTCTCAAAA
  AATAAGGTGG TGTATGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38617547	mCV23688376	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss323245678	CHEV_10_8607007	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29365023					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8762953 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	443 bp distal
Gm26674	predicted gene, 26674	331 bp downstream
Rr427412	regulatory region 427412	649 bp distal
Sash1	SAM and SH3 domain containing 1	1139 bp upstream
Tssr96654	transcription start site region 96654	1511 bp upstream
Tssr96655	transcription start site region 96655	1324 bp upstream
Tssr96656	transcription start site region 96656	1262 bp upstream
Tssr96657	transcription start site region 96657	1179 bp upstream
Tssr96658	transcription start site region 96658	1133 bp upstream
Tssr96659	transcription start site region 96659	1108 bp upstream
Tssr96660	transcription start site region 96660	1084 bp upstream
Tssr96661	transcription start site region 96661	993 bp upstream
Tssr96662	transcription start site region 96662	964 bp upstream
Tssr96663	transcription start site region 96663	666 bp upstream
Tssr96664	transcription start site region 96664	597 bp upstream