rs29366115 SNP Detail

Summary

• ID
  rs29366115
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13842069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGCCGC CGCAGCAAGA
  ACAAGGGCAC CGGGGGGCTT TCCTCCCCTC CTCCTCTCTC TCCTCTTCCT CCTCCTGCGC
  TGCGGTGACT TTACAGGTGA GCGGCCGCCG CGGCTGCGAG GATCCCCCCC ACCGCCCGCC
  GCGTCGCGCC CTCCTTCGGC CGCTGTCACC CGGACTGCCG GGAGCTGACA GCCGCCCGAG
  R
  GGCTCGCGGC CGGGAGGCTG GCGGCCGGCG GGAGGCGGGC TGGAGGTGAG GGGGTGGAGA
  GCTGGAGAGC GGGGCGCCGC CGTGCGCTGT CTCTCCCCGG TGGAGGAGGG TCTCCGCAAA
  AAGAGAAAGA AAAAGGAAAA AGAAAAAAAA AAAAAGACAT CTTCGGTGAC TGTGGCACAA
  GTATTTGCCA AGTTGAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38619210	mCV23171715	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss323255224	CHEV_10_13686131	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29366115					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13842069 () rs orientation: forward

Symbol	Name	Function Class
2900084C01Rik	RIKEN cDNA 2900084C01 gene	350 bp downstream
Cpgi1318	CpG island 1318	within coordinates
Gm56954	predicted gene, 56954	583 bp upstream
Gm66890	predicted gene, 66890	668 bp downstream
Hivep2	human immunodeficiency virus type I enhancer binding protein 2	within coordinates
Rr368929	regulatory region 368929	1786 bp upstream
Rr384171	regulatory region 384171	868 bp downstream
Rr427854	regulatory region 427854	1695 bp distal
Rr427855	regulatory region 427855	594 bp distal
Rr427856	regulatory region 427856	within coordinates
Rr427857	regulatory region 427857	37 bp distal
Rr427858	regulatory region 427858	65 bp proximal
Tssr3141	transcription start site region 3141	211 bp downstream
Tssr92402	transcription start site region 92402	1678 bp downstream
Tssr92403	transcription start site region 92403	1511 bp downstream
Tssr92404	transcription start site region 92404	1478 bp downstream
Tssr92405	transcription start site region 92405	1450 bp downstream
Tssr92406	transcription start site region 92406	1282 bp downstream
Tssr92407	transcription start site region 92407	1077 bp downstream
Tssr92408	transcription start site region 92408	1046 bp downstream
Tssr92409	transcription start site region 92409	1013 bp downstream
Tssr92410	transcription start site region 92410	986 bp downstream
Tssr92411	transcription start site region 92411	486 bp downstream
Tssr92412	transcription start site region 92412	454 bp downstream
Tssr92413	transcription start site region 92413	433 bp downstream
Tssr92414	transcription start site region 92414	215 bp downstream
Tssr92415	transcription start site region 92415	124 bp downstream
Tssr92416	transcription start site region 92416	103 bp downstream
Tssr92417	transcription start site region 92417	81 bp downstream
Tssr92418	transcription start site region 92418	41 bp downstream
Tssr92419	transcription start site region 92419	652 bp upstream
Tssr92420	transcription start site region 92420	684 bp upstream
Tssr92421	transcription start site region 92421	809 bp upstream
Tssr92422	transcription start site region 92422	1496 bp upstream
Tssr96784	transcription start site region 96784	675 bp upstream
Tssr96785	transcription start site region 96785	650 bp upstream
Tssr96786	transcription start site region 96786	425 bp downstream
Tssr96787	transcription start site region 96787	455 bp downstream
Tssr96788	transcription start site region 96788	496 bp downstream
Tssr96789	transcription start site region 96789	1151 bp downstream
Tssr96790	transcription start site region 96790	1308 bp downstream