rs29366419 SNP Detail

Summary

• ID
  rs29366419
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8516292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGTATTAGA GAATATTTTT GTCATTTGAT AACACATGAA
  GTTTCCATGC GTTATGACCT TTCTGTGATC TCTCACTGTT CACATCTGGT TCCCTCAAAT
  K
  TTGTAAGATT TTTCCTTTCC AATTTCTTAC TGTGTCTAGC ATAATTCTGG GCGAATAAAT
  AGATGGGTAG ATGTGTTACA AAGACATACT GGTTTGACG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38616547	mCV25374895	ABI	CRAMUS_MOUSE	f	SNP	G	G						G		T
ss50811426	NES14194960	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		T		G	T	G	T	T	G
ss146765734	ENSMUSSNP2181574	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29366419					SNP	G	G	G	G	G	G	G	G	T	T	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50811426	NES14194960	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8516292 () rs orientation: forward

Symbol	Name	Function Class
Rr223734	regulatory region 223734	1813 bp proximal
Rr229180	regulatory region 229180	509 bp proximal
Rr384116	regulatory region 384116	152 bp downstream