rs29367166 SNP Detail

Summary

• ID
  rs29367166
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42155252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCCAAAG ACTTCACTCA
  CTGTTTTTAA AACACCAAAT ATATATATAT ATATGTATAT ATGTACATAT ATATATACCA
  TATACATATA TGCGTGTATA CATATATATG TCTAGATACA CGTGTGTATA TATAAATATA
  TGTGTGTACA TATATATGTA TACATATATG TGTATATATA TACATCTATA TATGTATACG
  W
  GTGTGTGTGT GCTATGAAAG AAATCCATAT ATCTGTAAGT CTAAGCAGTT CGTCCCATTT
  GAGTACAGTG TATCCTAAGA GCATGCAGAA ATTTGGGACT TTAGAAGAGT TTGTGGATTC
  ACTGAGAGCA TTCTGACCCT GAAGGTAGGG ACAGATAGTG GGTGTTGGCC CAGTCGAATG
  CCTGCATTAT CTTTAAGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38621013	mCV23543110	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss147078842	ENSMUSSNP507570	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29367166					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42155252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1479	CpG island 1479	513 bp distal
Gm56983	predicted gene, 56983	1533 bp upstream
Gm66047	predicted gene, 66047	1317 bp downstream
Rr401852	regulatory region 401852	1395 bp downstream
Rr430525	regulatory region 430525	1544 bp distal
Rr430526	regulatory region 430526	1043 bp distal
Tssr97438	transcription start site region 97438	1642 bp upstream
Tssr97439	transcription start site region 97439	1616 bp upstream