rs29367411 SNP Detail

Summary

• ID
  rs29367411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86169454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAACCCA AGTCACCTTG
  GAGGAAGAGC ACCAGTGAGC TTGGTAATCA CTTGCCACTG TTTGTATGCC GGGACGGGAA
  GTGGCCTGCA GGAGGTCATC CACTGACAGA ACTAAGGTGC CTTGTGCCTT CTGTTATCTC
  AGGTTACCAT CACGGATTCC CTAGATATAC GTTTTGCTCT GACCTTCTGG CTTGAGCCAT
  Y
  TTATAGGGAT TTTTAGGGGT TGGGAGAGTG GCACCCACAA GGCTGAGCAC CAGGGGAACC
  CAGGGGCTTC TAGGCCTCTT CCATCTTCAT TCCTACTGTC TTGTCCTCAA ATGTAGATAC
  ATCCAGGGTC CCCAAAGGGG CAACAGGTTC CCAGGAAGGA CCTTGAAAAG GAAGGGGGAA
  GGAAGGTGCC ATGTATCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38622235	mCV24714846	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T	T
ss147219135	ENSMUSSNP2027202	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss323373804	CHEV_10_85796335	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29367411					SNP	T	C	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86169454 () rs orientation: forward

Symbol	Name	Function Class
Rr436452	regulatory region 436452	1006 bp distal
Rr436453	regulatory region 436453	127 bp distal
Rr436454	regulatory region 436454	1013 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	1961 bp downstream
Tssr94968	transcription start site region 94968	1930 bp downstream