rs29367612 SNP Detail

Summary

• ID
  rs29367612
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8820717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAGGCC TGTAATATGA
  AGTTCAGAGT CCCAGCCTTC ATTCTTAGCA TGTGTAGAAA TCTTTTAAAA TGATTTTGTA
  GATAAACGGA GGGTGGAAAA ACTTTCGAGT TTTACAGTAA AAACTTCTTT TGGCTTACAA
  AATCTTTTTT TTTTTCAGAG CCCTAGAGAA AAATGAGTAT CTGCATAATT AAATCAATGT
  M
  TCGTATATAA TGAATATCAA GTCGCAAAAG AACGCAAAGA CCTGGCAACA CAGTTCGAGA
  CGGAGGCTGC CTGACTCCTT GGAAGTTTCC TCAGTTTCTT CCTCACAGAA CGTTCCCCCT
  CCCCACTGTC CTCTCATGTC TCACAGTGAG AAGGACACCA ACCAGAACAA TAAAACAAAT
  CTTAGAACTT GAAAATCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss38625092	mCV23685944	ABI	CRAMUS_MOUSE	f	SNP		A	A	C		C
ss52141451	NES15242047	PERLEGEN	MM_PANEL2	f	SNP	C				A	C	C		A	A		C
ss146768445	ENSMUSSNP4988686	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			C
ss323245913	CHEV_10_8664771	CHEVERUD	SCREENING_POP	f	SNP								A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs29367612					SNP	C	A	A	C	A	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141451	NES15242047	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8820717 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	within coordinates
Gm67475	predicted gene, 67475	within coordinates
Rr427431	regulatory region 427431	within coordinates
Rr427432	regulatory region 427432	882 bp proximal
Tssr96665	transcription start site region 96665	262 bp downstream
Tssr96666	transcription start site region 96666	308 bp downstream