rs29367850 SNP Detail

Summary

• ID
  rs29367850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5205091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACTACA CGAGGGAGTA
  AGGATATGGG CTATGACCAC CGTACCCACT CTCTCTAATG TCTTGCCTTG GGCTGCAGCC
  CACTGTCCAG AGCATTCCCA CATCTCTTAG TCTCTCTGAT TTCTTCTTCG AGAACTCTGA
  GCCAAGCCCT AGACCCTCAG GAGTGCAAGA GGTGGCTACG GAGTGTGCTC TCAGTTTCAC
  S
  CAGGGCCTTC ATCTGAAACC GTCTTCTTGA GAGTAAGAGG TGGGCGGGTC AGTCAGCCTT
  GAGTACTAGA TCAGTAACTA CTGCTGTCAG AGGCTACCCT GGTAGCTGAA CAAGTCCTCC
  AAGAGCTGGT TTTGTTGGTT TAAGTTGCCC AACAAGTGAT AGGAATGAGG ATGTTTCAGA
  CAGAGCCTCA CCTTAACTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38628894	mCV23713793	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					G		G
ss52117731	NES15256563	PERLEGEN	MM_PANEL2	r	SNP	G		G	G	G	G	C		G	C	C	C		G	C	C	G		C
ss146738494	ENSMUSSNP5345092	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G							C
ss323239423	CHEV_10_5091450	CHEVERUD	SCREENING_POP	r	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29367850					SNP	C	C	C	C	C	C	G	G	C	G	G	G	C	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52117731	NES15256563	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5205091 () rs orientation: forward

Symbol	Name	Function Class
Rr227855	regulatory region 227855	1092 bp distal
Rr230259	regulatory region 230259	1665 bp proximal
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates