rs29367931 SNP Detail

Summary

• ID
  rs29367931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80410853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTACAGAGCA AGTCCCAGGA TTGCCCTGGC TACAGTCGTT TAAATTAACT AAAAGGCAGG
  ATGTAAATTC AGTGCTCCCC AGACACCCCC AAAATGACAT AAAGGTGCCC AGATCCAATA
  TGAATCTCTT GATCCCATGA ATGGTGTTAA TAAGGGAGTT TGGGGACACG GTATCCCGTG
  TGTGTCCTGG TGGTCAAGGA TGATTCAGGA TCCAGTGTAG AGTGGAACTC CATACCCCAC
  CTCGTGGACC TGCCTGCTGT CATCCCTAGA CCCCAGACTT CAGCTCTCAG GCCTCAATTT
  Y
  TCTAGCAAGG CAGGTCACCC TTCCCAGCTT AGGGGTGGCT TGCAGCCTTT GACATTTGAG
  TAACAGAACT GTCTCCAGGT GGGGAGGGCG TTGGATTCCT CTGTGATCGA CCTCAAGTTC
  TGGGAACTAG GAAGCCTGCT GGGTTGGAAG GTGTGGGTGG TGCAGTCTGA ATCAGAAAGA
  CAGGGTCCCT GGCTCAGCAG GCTCCCATCA CTGCAAGGCC AAATTCACTT GGTGTGAGCC
  AGGACACCCT GGATTCCAGT CTGTGGCAAA GAGAGACATC TTTCTCCACT CTCTCTCTCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss38626320	mCV22733551	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29367931					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80410853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1896	CpG island 1896	889 bp proximal
Klf16	Kruppel-like transcription factor 16	within coordinates
Rr435299	regulatory region 435299	715 bp proximal