rs29368414 SNP Detail

Summary

• ID
  rs29368414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:82330340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGAGCTCTTG TCTTTAGCTG CATATGTATC AAAAGATGGC CTAGTCGGTC ATCACTGCAA
  AGAGAGGCCC ATTGGACTCG CAAACTTTAT ATGCCCCAGT ACAGGGGAAC ACCAGGGCCA
  AAAAGGGGCA GTGGGTGGGT AGGGGATTGG GGGGGTGGGT TTGGGGGGAC TTTTGGGATA
  GCATTGAAAA TGTAAACGAG GAAAATACCT AATTTAAAAA AAAACTGCAT TCAAGTTGAG
  ACACAAGAGA GCCTTCTTCC ATCAGTGAGT CAAACACAAA CTTTCTACTC AAATATATTT
  Y
  TAAGACCCAT GTAAGGTGAG TTAAGCTATG AATATATGAC AGGTAGACTC TGAATAATAT
  TACTACTAAT AATATATATT ATATATAGTC AATCATATGC AGTCAATAAA AATTCCTTTT
  TTGATGCTAT TAAGACTTCT AAACATAGCA GCCTTATTTA TAATAGCCAG AAGCTGGAAA
  GAACCCAGAT GTCCCTCAAC AGAGGAATGA ATACAGAAAA TGTGATACAT TTACACAATG
  GAGTACTACT CAGCTATTAA AAACAATGAA TTTATGAAAT TCGTAGGCAA ATGGATGGAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss38627752	mCV23602899	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29368414					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:82330340 () rs orientation: forward

Symbol	Name	Function Class
Gm1553	predicted gene 1553	1888 bp upstream
Tssr98669	transcription start site region 98669	1958 bp upstream
Tssr98670	transcription start site region 98670	1881 bp upstream
Tssr98671	transcription start site region 98671	1861 bp upstream