rs29368708 SNP Detail

Summary

• ID
  rs29368708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13427905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAATCCC ATAATTATTA ACTGAGGGTT GTCTTTCCAA
  GACAAAGGGT TTAAAGCAGT GTGTGTGTGT GTGTGTGTGT GTGTTGCTCC TTCCCTGGGA
  Y
  CCAATGCAGT CAGCCTAGGC AAGCACTCTA CCACAAAGTT ACAATTCCAG CATCAAGATT
  TTTATCCTGT TTCTAACTTT CCTCTCAGCC AGTGAACTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38628121	mCV23066994	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss146822652	ENSMUSSNP4323099	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29368708					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13427905 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	746 bp upstream
Cpgi1315	CpG island 1315	690 bp proximal
Pex3	peroxisomal biogenesis factor 3	within coordinates
Rr368928	regulatory region 368928	778 bp upstream
Rr427802	regulatory region 427802	406 bp proximal
Rr427803	regulatory region 427803	667 bp proximal
Rr427804	regulatory region 427804	744 bp proximal
Rr427805	regulatory region 427805	949 bp proximal
Tssr92399	transcription start site region 92399	1026 bp upstream
Tssr92400	transcription start site region 92400	1084 bp upstream
Tssr96771	transcription start site region 96771	694 bp downstream
Tssr96772	transcription start site region 96772	838 bp downstream
Tssr96773	transcription start site region 96773	902 bp downstream
Tssr96774	transcription start site region 96774	950 bp downstream
Tssr96775	transcription start site region 96775	979 bp downstream
Tssr96776	transcription start site region 96776	994 bp downstream