rs29368878 SNP Detail

Summary

• ID
  rs29368878
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:121422110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CAGGATTTCC CAACTCTCCC
  W
  CTATGTCACC CATTTACTCC GTAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38629136	mCV25287810	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T	A
ss147637493	ENSMUSSNP80960	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29368878					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121422110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2289	CpG island 2289	42 bp proximal
Rr402304	regulatory region 402304	32 bp downstream
Rr402305	regulatory region 402305	521 bp upstream
Rr440247	regulatory region 440247	within coordinates
Rr440248	regulatory region 440248	572 bp proximal
Tbk1	TANK-binding kinase 1	Intron
Tssr96043	transcription start site region 96043	12 bp upstream
Tssr96044	transcription start site region 96044	48 bp upstream
Tssr99623	transcription start site region 99623	322 bp upstream
Tssr99624	transcription start site region 99624	295 bp upstream
Tssr99625	transcription start site region 99625	235 bp upstream
Tssr99626	transcription start site region 99626	505 bp downstream
Tssr99627	transcription start site region 99627	525 bp downstream
Tssr99628	transcription start site region 99628	608 bp downstream
Tssr99629	transcription start site region 99629	636 bp downstream
Tssr99630	transcription start site region 99630	664 bp downstream
Xpot	exportin, tRNA (nuclear export receptor for tRNAs)	1175 bp downstream