rs29368997 SNP Detail

Summary

• ID
  rs29368997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128047548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTGAAACTGA TGCCTGAGGG CAGAGCAAAA AAGAACTCGT AAACCTAGGG CTGTGTTTGA
  TCTGAAAGCT GTCCAGGCGA TGACGGGAAA TCGAGAAAAG TCAATGTCAA ATGTTAACAT
  GGAAAGAGCA GAGGTGCCGC TTTAGTAAGA CAGCCCTGGG AGCTGCAAAT CACTGACTGG
  GGAAGCCAGA AGCCGGTGCC CCAGGTTTGG AATCTTGCTA GATCAAGGCA GAGGGGAGAG
  AGGAGAAATG AGGAGTGGAG TTCTCTGATC GCGCTCTGGG AATGACACGT TAACTACTTT
  R
  GAGTGACAGA GTAAAAAAGA AATATGCCTA CCTCTCCGGG ATTCCACAGC AGGGACCCCC
  CATCGCTTGG TGCCCCAGCG GTACAACTTC CAACAGCGTG CAAAGGGCAG CGCCATCTTG
  TGCCACAGAT GCACGGGGCA CGCCCCCAGG GAACACCGAC CAATGACTGG TCCGCGCCCG
  GAGCACGTGG TGCGAGACGC GAGTGTCGTG AGAAATCGGT ATCTCGGTGA TTTCTAGTCT
  GGCGAGCTAG ATCAATACGT GAAGAGACGT ACTGATTATA TCTCAACTAA GTAGGATACC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38626550	mCV24907614	ABI	CRAMUS_MOUSE	f	SNP		A	A					G		G
ss50948639	NES14143301	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A		A	G	A	G	G		G	A	G	G
ss147738219	ENSMUSSNP2338958	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29368997					SNP	A	A	A	A	A	G	A	G	A	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948639	NES14143301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128047548 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	within coordinates
Cpgi2388	CpG island 2388	1400 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	1675 bp downstream
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	1052 bp proximal
Rr402345	regulatory region 402345	31 bp upstream
Rr402346	regulatory region 402346	1125 bp upstream
Spryd4	SPRY domain containing 4	within coordinates
Tssr99849	transcription start site region 99849	87 bp downstream
Tssr99850	transcription start site region 99850	109 bp downstream