rs29369821 SNP Detail

Summary

• ID
  rs29369821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5205267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGGAGTGT GCTCTCAGTT
  TCACGCAGGG CCTTCATCTG AAACCGTCTT CTTGAGAGTA AGAGGTGGGC GGGTCAGTCA
  GCCTTGAGTA CTAGATCAGT AACTACTGCT GTCAGAGGCT ACCCTGGTAG CTGAACAAGT
  CCTCCAAGAG CTGGTTTTGT TGGTTTAAGT TGCCCAACAA GTGATAGGAA TGAGGATGTT
  Y
  CAGACAGAGC CTCACCTTAA CTGAATGTAT ATCAGCTCTC TGCAGGAGGT CACATTAATT
  TCCCATCCCT TGAAATAATC ACTTCTTTTT CATAGGAATG AACCCTTTGG TTCTGATAGA
  ATTACCTGAA GATCTCGCAA CATTGTCTCA TGGGCATTGG TGTCACCCTC ATGCACTGAA
  CATCGGTCAA GTTTCTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38629184	mCV23713783	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		T
ss52117735	NES15256561	PERLEGEN	MM_PANEL2	r	SNP	G		G	G	G	G	A		G	A	A	A		G	A	A		A
ss146738491	ENSMUSSNP621556	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G							A
ss323239422	CHEV_10_5091274	CHEVERUD	SCREENING_POP	r	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29369821					SNP	C	C	C	C	C	C	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52117735	NES15256561	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5205267 () rs orientation: forward

Symbol	Name	Function Class
Rr227855	regulatory region 227855	1268 bp distal
Rr230259	regulatory region 230259	1489 bp proximal
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates