rs29370131 SNP Detail

Summary

• ID
  rs29370131
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90917930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC CTGGTACAAG AGCAGGAGGA
  K
  GATTACCAAA CATCCCGCGT CCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss38625805	mCV24611887	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss147290219	ENSMUSSNP4755251	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323387272	CHEV_10_90544813	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs29370131					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90917930 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	within coordinates
Cpgi2099	CpG island 2099	115 bp proximal
Ikbip	IKBKB interacting protein	872 bp upstream
Rr402144	regulatory region 402144	786 bp upstream
Rr436976	regulatory region 436976	within coordinates
Rr436977	regulatory region 436977	351 bp proximal
Tssr95222	transcription start site region 95222	23 bp upstream
Tssr95223	transcription start site region 95223	956 bp upstream
Tssr95224	transcription start site region 95224	968 bp upstream
Tssr95225	transcription start site region 95225	1013 bp upstream
Tssr98900	transcription start site region 98900	488 bp downstream
Tssr98901	transcription start site region 98901	585 bp downstream
Tssr98902	transcription start site region 98902	615 bp downstream
Tssr98903	transcription start site region 98903	636 bp downstream
Tssr98904	transcription start site region 98904	715 bp downstream