rs29370220 SNP Detail

Summary

• ID
  rs29370220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13430238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTTCAAA TCCATCTAAA CAGTTAGACC TATTTGACTC
  AACTCTTTTG CATTTGTGAC AAAGGGAAGG GACAGACTGG AAGAAATGGG AGGGGCAATG
  R
  AAAGTCTGAG ACTGGGTGGA GTGTTGTGGA TTTTCAGCCT CAAGCTTTGA ACTTGTCCAT
  AGAGGAAATG CATGCACATT TGCATGTATT TGCCCTGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38628182	mCV23067244	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss146822742	ENSMUSSNP3297437	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29370220					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13430238 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Cpgi1315	CpG island 1315	1009 bp distal
Pex3	peroxisomal biogenesis factor 3	1352 bp upstream
Rr368928	regulatory region 368928	1183 bp downstream
Rr427802	regulatory region 427802	1667 bp distal
Rr427803	regulatory region 427803	1590 bp distal
Rr427804	regulatory region 427804	1385 bp distal
Rr427805	regulatory region 427805	862 bp distal
Rr427806	regulatory region 427806	within coordinates
Tssr92399	transcription start site region 92399	1255 bp downstream
Tssr92400	transcription start site region 92400	1236 bp downstream
Tssr96771	transcription start site region 96771	1624 bp upstream
Tssr96772	transcription start site region 96772	1433 bp upstream
Tssr96773	transcription start site region 96773	1409 bp upstream
Tssr96774	transcription start site region 96774	1368 bp upstream
Tssr96775	transcription start site region 96775	1341 bp upstream
Tssr96776	transcription start site region 96776	1328 bp upstream