rs29370323 SNP Detail

Summary

• ID
  rs29370323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:42739166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGCAGT TTTTCTGGAG
  CCAAGGGCAT ACCACACACA CATGTACACA CCCCTTGTGC CGCACACTTT AGAACAAGCA
  GCTACCTCTG AAAGTTTCAG CACCTCATGA CCTCTGGGTA GCTGGCTCGG TGCTCCTTAG
  AGATCAGAAT TCTAGCTTCC TCCTGTTTCA TATTCTTAGA TTTGATTTGA GAATGGATTT
  R
  GGATGAGGAG GAAGACAGAT CCCTTTCCCA CCAGGGAAGA GTAAAATCGT TTTCCTGTTT
  CAGGAGTGAT GTTCATGAGA ACAGGTGCCT GTCAGGTGTG AGCACACAGA CTTCCTTCTA
  TTGATGGGCA AATTCAGTGT TTCTGAGAAA ACTTTAAAAA AAAAAAAAGT TTGGATATTT
  TATGTCTTAA TCCCGAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss38633505	mCV23431143	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G
ss47857579	NES11970994	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	A	G	G
ss147083893	ENSMUSSNP5771332	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs29370323					SNP	A	A	G	G	G	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47857579	NES11970994	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:42739166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1495	CpG island 1495	931 bp proximal
Gm34006	predicted gene, 34006	within coordinates
Gm66346	predicted gene, 66346	1519 bp upstream
Rr368979	regulatory region 368979	640 bp downstream
Scml4	Scm polycomb group protein like 4	within coordinates
Tssr93120	transcription start site region 93120	1582 bp downstream
Tssr97454	transcription start site region 97454	827 bp downstream
Tssr97455	transcription start site region 97455	1051 bp downstream