rs29370669 SNP Detail

Summary

• ID
  rs29370669
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:12744549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGAAAGT GCAGAAGTTG
  GCTACAGCTA CTTCGGGACC CGGGCGGTGG AACTGCAGAA AGGTCCCACC TCCTTTCAAC
  CCCCGCCCCA TTCCCTAGGG GACTGCGGTC ACATTACCCA GACCGAAGCT TCAATAATGC
  ATGGGCTTAC CTGCTAGCCA AGTCCCAGAG GCCCCAAGGT TCCTCTGGGC GTGTTCGGGT
  S
  GTGGGGAGCT TGCCTTGGAC GTTACAAGAA TTTTTTTTAA GTGAAACGTG GAAAGCCCGA
  CAAGATCCAA AGGGGGGTGG GGGGGGGGGA GATCCAAAAT TGACACCCGA TTGGAAACGC
  CCCCTGACTT GTGCAATCTT CCTGCCCGGT AGTTCCGCCA AAAACAAAAC AGTCCAAACG
  CTAGCCTGGG GGCAGGCGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38627648	mCV23883031	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss146804278	ENSMUSSNP306045	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		G
ss323253697	CHEV_10_12588603	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29370669					SNP	G	C	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:12744549 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1300	CpG island 1300	1076 bp distal
Cpgi1301	CpG island 1301	within coordinates
Gm66629	predicted gene, 66629	within coordinates
Rr224421	regulatory region 224421	within coordinates
Tssr3138	transcription start site region 3138	637 bp downstream
Tssr92368	transcription start site region 92368	373 bp downstream
Tssr92369	transcription start site region 92369	162 bp upstream
Tssr96723	transcription start site region 96723	618 bp upstream
Tssr96724	transcription start site region 96724	578 bp upstream
Tssr96725	transcription start site region 96725	501 bp upstream
Tssr96726	transcription start site region 96726	279 bp downstream
Tssr96727	transcription start site region 96727	339 bp downstream
Tssr96728	transcription start site region 96728	684 bp downstream
Tssr96729	transcription start site region 96729	825 bp downstream
Utrn	utrophin	within coordinates