rs29370839 SNP Detail

Summary

• ID
  rs29370839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:68000862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCCAGATGTT TAACATTCAT TCCAAATTTC TCAATAAATG AGCACGCCAG GAAAGCAAAC
  ACGAGCTGAC AGTATTTAGT CTAAGTTTCT TTAAATGGTT TAACATGGCC AATAACAGTA
  TTTCATTATC AGGCATTATT AAGGCATTCA GAAAGAGGGG TTGTGGGATA TGAGGCAGAG
  CAGCGGATAA ATATAGTTAT CACAATGATA ACCATACTGT TTGGGGTTTT CATAATCTGC
  TGTGGTAATG AGTCTTGTCT TCTGTCTTCT GAATTCCATA TATATATATA TATATATATA
  Y
  ATATATATAT ATATATATGA ATTTCATATA CATATACAAA TATATGCATG TGAATATATC
  TGAATATATC TATTCATAAC AAATCCATGA TCCCAGCTCA CTGCCACAAG TGCTCATTAA
  CAACCACCAC AAACTCACAG TCAGTTCTGT GAGCTTTGAA CCAGTTCCAG AACCAGGGCT
  ACAGCAAGTG GCAGTTTGGC CTTTTCGCTT CTCTGAAAAA AAAAAATTTT TTTTTTAACA
  CCTAAAAAAA TTCCCCATAA CTGCTCCCTT CACACCTTTT ATCTCCTTCC TAAATCCAAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss38630843	mCV24109799	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29370839					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:68000862 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Gm51770	predicted gene, 51770	within coordinates
Gm66190	predicted gene, 66190	within coordinates
Gm66212	predicted gene, 66212	within coordinates
Rr401964	regulatory region 401964	317 bp upstream
Rr433213	regulatory region 433213	84 bp proximal
Rr433214	regulatory region 433214	387 bp proximal