rs29371078 SNP Detail

Summary

• ID
  rs29371078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:25758949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT CAGAAGTAGG AAAGCACAGG
  R
  AAAGCCAAGA TACTGGTGAG AAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss38634677	mCV25109208	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss52193819	NES15225015	PERLEGEN	MM_PANEL2	f	SNP				G	A		G	G		G
ss147013862	ENSMUSSNP4412678	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss323277630	CHEV_10_25602857	CHEVERUD	SCREENING_POP	f	SNP						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs29371078					SNP	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52193819	NES15225015	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:25758949 () rs orientation: forward

Symbol	Name	Function Class
Gm47930	predicted gene, 47930	622 bp upstream
Gm66740	predicted gene, 66740	75 bp upstream
Rr218979	regulatory region 218979	within coordinates
Rr218980	regulatory region 218980	252 bp proximal