rs29371219 SNP Detail

Summary

• ID
  rs29371219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:121577213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGCAATT GCTATTACAG GGTTACTGTC
  CTGTTTTCTA CAGTGTAGTG AGTTGGGTAT GCATTTTATG GGAGGTGGTG GGTCTCAAAC
  CTGAACACAC CTGCCTTGAA TAACCAGATT GAgtgtgtgt gtgtgtgtgt gtgtgtgtgt
  R
  tatatatata tatatacata tatatgtata tatatCCTTT ATTCAAAGCA TGTACAAATA
  TTATTTATAT GATGACTATT CATGTATGCA TTTGATATAT ATCATATATA TGATACATTC
  TAGCAGTAAT ATCGAAGGTG GATAATATTC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38629240	mCV24941289	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss323514845	CHEV_10_121178364	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29371219					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:121577213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2295	CpG island 2295	776 bp distal
Kics2	KICSTOR subunit 2	Intron
Rr440270	regulatory region 440270	1360 bp distal
Rr440271	regulatory region 440271	1112 bp proximal
Tssr96047	transcription start site region 96047	1343 bp downstream
Tssr99640	transcription start site region 99640	984 bp upstream