rs29371337 SNP Detail

Summary

• ID
  rs29371337
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103202116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGAACTTT AAGTGTGTAT ATGTCCCAAG AAACATAGTC
  TCAGAAGCAA ACATATCACT TTCCCTGCAC AGGTAAATTT AATCTTGTTT TTAGAGGACA
  K
  TGCTTTCCAT TTTCTGAAAT TGCTTACCCT GCAGTATGAA GATTCCAGTC TCAACCTATA
  GAGCAATGTA TGTGTATGTG TAAGCAAACA TTTGCTTGC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38629440	mCV24987570	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					G	T
ss52209788	NES15330517	PERLEGEN	MM_PANEL2	f	SNP			T	G	T	T	T		T	G	T		T		G	G		T
ss147416477	ENSMUSSNP6849375	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T					G
ss323430991	CHEV_10_102828889	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29371337					SNP	T	T	T	G	T	T	T	G	T	G	T	T	T	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209788	NES15330517	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103202116 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	934 bp downstream
Cpgi2165	CpG island 2165	1193 bp proximal
Gm66970	predicted gene, 66970	243 bp downstream
Rr385217	regulatory region 385217	1742 bp upstream
Rr438423	regulatory region 438423	1063 bp proximal
Rr438424	regulatory region 438424	1599 bp proximal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	1528 bp upstream
Tssr95604	transcription start site region 95604	1397 bp upstream
Tssr95605	transcription start site region 95605	1437 bp upstream
Tssr95606	transcription start site region 95606	1493 bp upstream