rs29371787 SNP Detail

Summary

• ID
  rs29371787
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40481535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGATTTGT GCTTGAATGC
  TAAATTAAAA GAGAGAGAGA GAGAGACTGG GTATAAAACA TCATAGACAA ATAAATAGTT
  TGAAATTAAC AAAATGAAGT TCATAAAGAG AAAAATAACT TAAAAAGAAC AGCCACATAA
  AGATGGAAAA GAGTTTAAGA AAACTTATGT ACAGGAAACA ATATTAAGCT TAGAAAGCAT
  K
  AAGAGAGAAA TAAATAAATA CACCTGGAAG ATAAGTCTCT AAAACAAAGA GAGAGAAAAA
  TAAACTGAAA TCTCCAGAGG AAGGAGAAAC TTAGAGAGAT TAAAAAAGGA AATATTTTCC
  ATGCAAAAAT ATGGAAAACA CGATAGAAGA AGGCATTTGG ACCCCATATA GTTTTGTTTT
  GACTGTCAAC ATAAAAATAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38631586	mCV23537213	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		T
ss61273416	NES16894495	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	G	T		T	T	T	T	T	T	T	T	T
ss147067215	ENSMUSSNP538279	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29371787					SNP	G	G	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61273416	NES16894495	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40481535 () rs orientation: forward

Symbol	Name	Function Class
Rr214672	regulatory region 214672	135 bp distal
Rr222650	regulatory region 222650	165 bp distal
Slc22a16	solute carrier family 22 (organic cation transporter), member 16	1407 bp downstream