rs29371895 SNP Detail

Summary

• ID
  rs29371895
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127346874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGA GGGCCTGATG GGAGTGTTGC
  R
  GCAGGAACCG AAGGAGGTCT GCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38626474	mCV22968923	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss61334356	NES16949425	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	A		A	A	G	A		A	G	A	A		A
ss147732736	ENSMUSSNP1938208	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss323529632	CHEV_10_126948061	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29371895					SNP	A	A	G	A	G	A	A	A	A	A	G	A	G	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61334356	NES16949425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127346874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2360	CpG island 2360	1409 bp distal
Cpgi2361	CpG island 2361	536 bp proximal
Cpgi2362	CpG island 2362	1692 bp proximal
Rr402329	regulatory region 402329	1674 bp downstream
Rr402330	regulatory region 402330	1795 bp upstream
Rr440928	regulatory region 440928	1856 bp distal
Rr440929	regulatory region 440929	1244 bp distal
Rr440930	regulatory region 440930	921 bp proximal
Rr440931	regulatory region 440931	1084 bp proximal
Rr440932	regulatory region 440932	1279 bp proximal
Rr440933	regulatory region 440933	1960 bp proximal