rs29373110 SNP Detail

Summary

• ID
  rs29373110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:86169087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAAAGAC TCTGGGCTGT
  GTGTTTGGAG TGGTGGGTAC AGGAATGGAG CAAGCTGCCA TTCCCCGAGA CAGAGAAGGC
  CCTCAGAGGC CCAGTTATGG GTGTGGCCTG TTATCAGGAG CTCAGCGTTG GATAAGTACC
  TCACACAGCT CAGCAGACTA TCAGGGGAGA GCACCATAGA AAGGCATAGA AGTCATGGAA
  R
  TTCTGGATTG GGGTTTCCAA GCAGTTGGTC ATTGTCACTT GCATGGGCTG CATAGAAAAC
  CACAGTTGTG AGTAAAGAGA ATGATTAAGT AGGAACACAC CATTGATTGG ACTGGGTCTC
  TTGGATGGTA TGGGTCATTC TGAAAACTGG CTTCGGTGAG GTGAGGAGAA AACCCAAGTC
  ACCTTGGAGG AAGAGCACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38637463	mCV24714856	ABI	CRAMUS_MOUSE	f	SNP	G	A	A					G		G
ss47922529	NES12032659	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		G	G	G	G		G	A	G	G		G
ss147219125	ENSMUSSNP512199	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
ss323373802	CHEV_10_85795968	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29373110					SNP	G	A	A	A	A	G	A	G	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47922529	NES12032659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:86169087 () rs orientation: forward

Symbol	Name	Function Class
Rr436452	regulatory region 436452	639 bp distal
Rr436453	regulatory region 436453	within coordinates
Rr436454	regulatory region 436454	1380 bp proximal
Syn3	synapsin III	within coordinates
Timp3	tissue inhibitor of metalloproteinase 3	within coordinates
Tssr94967	transcription start site region 94967	1594 bp downstream
Tssr94968	transcription start site region 94968	1563 bp downstream